Package: zAMPExplorer 0.1.0

Sedreh Nassirnia

zAMPExplorer: A Versatile Shiny App for Microbiota Profiling in Clinical Microbiology

A Shiny web application offering a user-friendly, accessible, and reproducible platform for downstream analysis of 16S rRNA-based metagenomics data. Key features include quality control visualizations (e.g., rarefaction curves), community composition plots, and statistical analyses for alpha- and beta-diversity. The app integrates advanced features like community typing with Dirichlet multinomial modeling (DMM) and metadata-driven redundancy analysis (RDA) to explore microbial associations with clinical and experimental variables.

Authors:Sedreh Nassirnia [aut, cre], Violeta Castelo-Szekely [aut], Farid Chaabane [aut], Valentin Scherz [aut], Trestan Pillonel [aut], Gilbert Greub [aut], Claire Bertelli [aut]

zAMPExplorer_0.1.0.tar.gz
zAMPExplorer_0.1.0.zip(r-4.5)zAMPExplorer_0.1.0.zip(r-4.4)zAMPExplorer_0.1.0.zip(r-4.3)
zAMPExplorer_0.1.0.tgz(r-4.4-any)zAMPExplorer_0.1.0.tgz(r-4.3-any)
zAMPExplorer_0.1.0.tar.gz(r-4.5-noble)zAMPExplorer_0.1.0.tar.gz(r-4.4-noble)
zAMPExplorer_0.1.0.tgz(r-4.4-emscripten)zAMPExplorer_0.1.0.tgz(r-4.3-emscripten)
zAMPExplorer.pdf |zAMPExplorer.html✨
zAMPExplorer/json (API)

# Install 'zAMPExplorer' in R:

install.packages('zAMPExplorer', repos = c('https://metagenlab.r-universe.dev', 'https://cloud.r-project.org'))

The latest version of this package failed to build. Look at thebuild logs for more information.

Bug tracker:https://github.com/metagenlab/zampexplorer/issues

On CRAN:

shinyapps statisticalmethod metagenomics visualization sequencing microbiome

2.78 score 2 scripts 1 exports 176 dependencies

Last updated 2 months agofrom:e4fc8d9d31 (on main). Checks:1 OK, 6 WARNING. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Dec 20 2024
R-4.5-win	WARNING	Dec 20 2024
R-4.5-linux	WARNING	Dec 20 2024
R-4.4-win	WARNING	Dec 20 2024
R-4.4-mac	WARNING	Dec 20 2024
R-4.3-win	WARNING	Dec 20 2024
R-4.3-mac	WARNING	Dec 20 2024