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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "zAMPExplorer" in publications use:'
type: software
license: GPL-3.0-only
title: 'zAMPExplorer: A Versatile Shiny App for Microbiota Profiling in Clinical Microbiology'
version: 0.1.0
doi: 10.32614/CRAN.package.zAMPExplorer
abstract: A Shiny web application offering a user-friendly, accessible, and reproducible
  platform for downstream analysis of 16S rRNA-based metagenomics data. Key features
  include quality control visualizations (e.g., rarefaction curves), community composition
  plots, and statistical analyses for alpha- and beta-diversity. The app integrates
  advanced features like community typing with Dirichlet multinomial modeling (DMM)
  and metadata-driven redundancy analysis (RDA) to explore microbial associations
  with clinical and experimental variables.
authors:
- family-names: Nassirnia
  given-names: Sedreh
  email: Sedreh.Nassirnia@chuv.ch
  orcid: https://orcid.org/0009-0008-7012-6983
- family-names: Castelo-Szekely
  given-names: Violeta
- family-names: Chaabane
  given-names: Farid
- family-names: Scherz
  given-names: Valentin
- family-names: Pillonel
  given-names: Trestan
- family-names: Greub
  given-names: Gilbert
- family-names: Bertelli
  given-names: Claire
repository: https://metagenlab.r-universe.dev
repository-code: https://github.com/metagenlab/zAMPExplorer
commit: e4fc8d9d319959f76b6795adbfd7c1a9eb8ac901
url: https://github.com/metagenlab/zAMPExplorer
contact:
- family-names: Nassirnia
  given-names: Sedreh
  email: Sedreh.Nassirnia@chuv.ch
  orcid: https://orcid.org/0009-0008-7012-6983