# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "Maaslin2" in publications use:'
type: software
license: MIT
title: 'Maaslin2: "Multivariable Association Discovery in Population-scale Meta-omics
  Studies"'
version: 1.15.1
doi: 10.1371/journal.pcbi.1009442
identifiers:
- type: doi
  value: 10.32614/CRAN.package.Maaslin2
abstract: MaAsLin2 is comprehensive R package for efficiently determining multivariable
  association between clinical metadata and microbial meta'omic features. MaAsLin2
  relies on general linear models to accommodate most modern epidemiological study
  designs, including cross-sectional and longitudinal, and offers a variety of data
  exploration, normalization, and transformation methods. MaAsLin2 is the next generation
  of MaAsLin.
authors:
- family-names: Mallick
  given-names: Himel
  email: himel.stat.iitk@gmail.com
- family-names: Rahnavard
  given-names: Ali
  email: gholamali.rahnavard@gmail.com
- family-names: McIver
  given-names: Lauren
  email: lauren.j.mciver@gmail.com
preferred-citation:
  type: article
  title: Multivariable Association in Population-scale Meta-omics Studies.
  authors:
  - family-names: Mallick
    given-names: Himel
    email: himel.stat.iitk@gmail.com
  - family-names: Rahnavard
    given-names: Ali
    email: gholamali.rahnavard@gmail.com
  - family-names: McIver
    given-names: Lauren J.
  - family-names: Ma
    given-names: Siyuan
  - family-names: Zhang
    given-names: Yangcong
  - family-names: Nguyen
    given-names: Long H.
  - family-names: Tickle
    given-names: Timothy L.
  - family-names: Weingart
    given-names: Geroge
  - family-names: Ren
    given-names: Boyu
  - family-names: Schwager
    given-names: Emma H.
  - family-names: Chatterjee
    given-names: Suvo
  - family-names: Thompson
    given-names: Kelsey N.
  - family-names: Wilkinson
    given-names: Jeremy E.
  - family-names: Subramanian
    given-names: Ayshwarya
  - family-names: Lu
    given-names: Yiren
  - family-names: Waldron
    given-names: Levi
  - family-names: Paulson
    given-names: Joseph N.
  - family-names: Franzosa
    given-names: Eric A.
  - family-names: Bravo
    given-names: Hector Corrada
  - family-names: Huttenhower
    given-names: Curtis
  year: '2021'
  journal: PLOS Computational Biology
  volume: '17'
  issue: '11'
  doi: 10.1371/journal.pcbi.1009442
  url: http://huttenhower.sph.harvard.edu/maaslin2
  start: e1009442
repository: https://metagenlab.r-universe.dev
repository-code: https://github.com/biobakery/maaslin2
commit: 02ba5133bd2077594239c72754bfd3dde658a3bc
url: http://huttenhower.sph.harvard.edu/maaslin2
contact:
- family-names: McIver
  given-names: Lauren
  email: lauren.j.mciver@gmail.com
references:
- type: manual
  title: 'MaAsLin 2: Multivariable Association in Population-scale Meta-omics Studies.'
  authors:
  - family-names: Mallick
    given-names: Himel
  - family-names: Rahnavard
    given-names: Ali
  - family-names: McIver
    given-names: Lauren J.
  year: '2020'
  notes: R/Bioconductor package
  url: http://huttenhower.sph.harvard.edu/maaslin2