Package: Maaslin2 1.15.1

Lauren McIver

Maaslin2: "Multivariable Association Discovery in Population-scale Meta-omics Studies"

MaAsLin2 is comprehensive R package for efficiently determining multivariable association between clinical metadata and microbial meta'omic features. MaAsLin2 relies on general linear models to accommodate most modern epidemiological study designs, including cross-sectional and longitudinal, and offers a variety of data exploration, normalization, and transformation methods. MaAsLin2 is the next generation of MaAsLin.

Authors:Himel Mallick [aut], Ali Rahnavard [aut], Lauren McIver [aut, cre]

Maaslin2_1.15.1.tar.gz
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Maaslin2_1.15.1.tgz(r-4.3-any)
Maaslin2_1.15.1.tar.gz(r-4.5-noble)Maaslin2_1.15.1.tar.gz(r-4.4-noble)
Maaslin2_1.15.1.tgz(r-4.4-emscripten)Maaslin2_1.15.1.tgz(r-4.3-emscripten)
Maaslin2.pdf |Maaslin2.html✨
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NEWS

# Install 'Maaslin2' in R:
install.packages('Maaslin2', repos = c('https://metagenlab.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/biobakery/maaslin2/issues

On BioConductor:Maaslin2-1.21.0(bioc 3.21)Maaslin2-1.20.0(bioc 3.20)

metagenomicssoftwaremicrobiomenormalizationbiobakerybioconductordifferential-abundance-analysisfalse-discovery-ratemultiple-covariatespublicrepeated-measurestools

10.37 score 123 stars 5 packages 484 scripts 1 exports 116 dependencies

Last updated 13 days agofrom:02ba5133bd. Checks:OK: 1 NOTE: 3. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 23 2024
R-4.5-linuxNOTENov 23 2024
R-4.3-winNOTENov 23 2024
R-4.3-macNOTENov 23 2024

Exports:Maaslin2

Dependencies:abindbackportsbiglmBiobaseBiocGenericsbitopsbootbroomcarcarDatacaToolschemometricsclasscliclustercodacodetoolscolorspacecowplotcplmcpp11data.tableDBIDEoptimRDerivdoBydplyre1071edgeRfansifarverforeachFormulagenericsgetoptggplot2glmmTMBglmnetgluegplotsgtablegtoolshashisobanditeratorsKernSmoothlabelinglarslatticelifecyclelimmalme4lmerTestlocfitloggingmagrittrMASSMatrixMatrixModelsmatrixStatsmclustmetagenomeSeqmgcvmicrobenchmarkminqamodelrmunsellmvtnormnlmenloptrnnetnumDerivoptparsepbapplypbkrtestpcaPPpermutepheatmappillarpkgconfigplsplyrproxypsclpurrrquantregR6rbibutilsRColorBrewerRcppRcppEigenRdpackreformulasreshape2rlangrobustbaserpartscalesshapesomSparseMstatmodstringistringrsurvivaltibbletidyrtidyselectTMBtweedieutf8vctrsveganviridisLitewithrWrench

Maaslin2

Himel Mallick, Ali Rahnavard, Lauren McIver

Rendered frommaaslin2.Rmdusingknitr::rmarkdownon Nov 23 2024.

Last update: 2023-06-07
Started: 2019-05-10